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Software and Data Analysis Support Materials

This page contains all documentation and training videos related to our software products.

Search for a document by keyword or part number, or browse the list below:

Software Support Documentation

We offer a variety of support documents for our software products, including several guides, specification sheets, release notes, etc.

Bionano Access™ Software

Release Notes
Bionano Access v1.8 Release Notes – RNOTE-00005, Rev B
Bionano Solve v3.8 Release Notes – RNOTE-00007, Rev A

Guidelines
Data Collection Guidelines – 30173, Rev F
Bionano Access: Dashboard and Chip Metrics Guidelines – 30304, Rev B
Saphyr Molecule Quality Report Guidelines – 30223, Rev C
Bionano Access: De Novo Assembly Informatics Report Guidelines – CG-30255, Rev E
Bionano Access: Hybrid Scaffold Report Guidelines – 30324, Rev A

Theory of Operation
Bionano Solve Theory of Operation: Structural Variant Calling – CG-30110, Rev M
Bionano Solve Theory of Operation: Variant Annotation Pipeline – CG-30190, Rev L
Bionano Solve Theory of Operation: Bionano EnFocus FSHD Analysis – CG-30321, Rev E
Bionano Solve Theory of Operation: Bionano EnFocus Fragile X Analysis – CG-30457, Rev B
Bionano Solve Theory of Operation: Hybrid Scaffold – CG-30073, Rev G

User Guide
Bionano Access Software User Guide – CG-30142, Rev O

Installation Guide
Bionano Access Installation Guide – CG-30170, Rev AH
Bionano Solve Installation Guide – CG-30182, Rev P

Data Interpretation Guide
Bionano Saphyr System Application Specifications – CG-00008, Rev B
Visualizing Different Classes of Structural Variants in Bionano Access Software – CG30548, Rev B

Analysis Quick Start
Analysis Quick Start: Annotated Rare Variant Calling – 30375, Rev A

Specification Sheet
OGM File Format Specification Sheet – CG-00045, Rev A

Technical Documentation
Data Security Guidelines – CG-30292, Rev D
Bionano Access API Guide – CG-30462, Rev B
How to enable HTTPS in Bionano Access – 30377, Rev B
Guidelines for Running Bionano Solve on the Command Line – CG-30205, Rev I
How to Align a bnx to a Reference – 30194, Rev B

Compute On Demand

Release Notes
Bionano Compute On Demand v1.4 Release Notes – RNOTE-00006, Rev A

Technical Documentation
Data Security Guidelines – CG-30292, Rev D

NxClinical Software

Release Notes
NxClinical Annotation and Track Updates Release Notes – RNOTE-00003, Rev B
NxClinical 6.2 Release Notes – RNOTE-00001, Rev B

System Requirements
NxClinical System Requirements for AWS – 30580, Rev A
NxClinical System Requirements for Local Installation – 30577, Rev A

User Guide
NxClinical License Update Instructions (Windows) – 30579, Rev A
NxClinical License Update Instructions (Linux) -30578, Rev A
NxClinical Query Example Sheet – 30581, Rev A

Other Software

Release Notes
Bionano Label Density Calculator v1.0 Release Notes – 30317, Rev A

User Guide
Bionano Label Density Calculator User Guide – 30318, Rev A

Software Support Videos

Watch these short software tutorial and educational videos to learn how to perform administrative functions or get the most out the software with in-depth sessions on how to execute certain features.

Bionano Access™ Software

Video
1:56

Bionano Access v1.7 – Rare Variant Analysis Workflow – 30420, Rev A
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Video
14:36

Bionano Access v1.7 – De Novo Assembly Workflow – 30416, Rev A
Watch now
Video
14:24

Bionano Access v1.7 – EnFocus FSHD Workflow – 30421, Rev A
Watch now
Video
17:21

Bionano Access v1.7 – EnFocus Fragile X Workflow – 30427, Rev A
Watch now
Video
16:39

Bionano Access v1.7 – AOH Workflow – 30428, Rev A
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NxClinical Software

Video
27:19

What is NxClinical and how can it help my case review
Watch now
Video
10:00

UPD Detection from SNP arrays or NGS Data
Watch now
Video
13:34

Increase efficiency and improve turnaround time by utilizing the Variant Interpretation Assistant system
Watch now
Video
10:33

Building and using Gene & Region Panels in NxClinical
Watch now
Video
25:00

Cancer predisposition review (combined CNV and Seq var analysis)
Watch now
Video
29:09

Combinatorial analysis of Copy Number and Sequence Variants at your fingertips
Watch now
Video
27:21

Constitutional singleton case review – Combined Cyto and Molecular analysis using NGS and array data (from raw data to final report)
Watch now
Video
27:21

Constitutional singleton case review – Cytogenetic workflow (from raw data to final report)
Watch now
Video
28:38

Copy Number analysis by NGS Urban legend or true reality
Watch now
Video
8:51

Dealing with mosaicism (detection and measurement options and functionality)
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Video
9:54

Delving into the genes track – transcript selection, linking out to your favorite databases
Watch now
Video
19:35

Detecting CNV & AOH events from NGS data using the MSR and Self-Reference Algorithms
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Video
15:15

Detecting CNV & AOH events from SNP array data
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Video
13:37

Inheritance analysis using array or NGS data
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Video
25:58

Making your oncology case review process more efficient
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Video
22:44

Modern CMA Solutions – New GDA-Cyto and GSA-Cyto SNP arrays with NxClinical
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Video
18:09

NxClinical 6.0 Homepage Overview
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Video
10:30

Overview of Admin Functions
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Video
16:53

Utilizing HPO terms to generate SAP scores to prioritize variants and improve case review efficiency
Watch now

LOOKING FOR ADDITIONAL INFORMATION?

Software Support Products

Get support information for our software products, including NxClinical, Bionano Access, and our Compute on Demand solutions.

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Software Downloads

Find the most recent software versions to download.

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Public Datasets

See example OGM data generated with the Saphyr system using Bionano Access and Solve.

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Contact Support

For Instrument, Kits, Consumables, and Access Software Support

support@bionano.com

For NxClinical and Nexus Copy Number Software Support

software-support@bionano.com