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Software and Data Analysis Support Materials

This page contains all documentation and training videos related to our software products.

Search for a document by keyword or part number, or browse the list below:

Software Support Documentation

We offer a variety of support documents for our software products, including several guides, specification sheets, release notes, etc.

Bionano Access™ Software

Release Notes
Bionano Compute On Demand 1.4.1.1 Release Notes – RNOTE-00013, Rev A
Bionano Solve v3.8.1.1 Release Notes – RNOTE-00014, Rev A
Bionano Access v1.8.1.1 Release Notes – RNOTE-00012, Rev A
Bionano Access v1.8.1 Release Notes – RNOTE-00005, Rev D
Bionano Solve v3.8.1 Release Notes – RNOTE-00007, Rev C

Guidelines
Data Collection Guidelines – CG-30173, Rev H
Bionano Access: Dashboard and Chip Metrics Guidelines – 30304, Rev D
Molecule Quality Report Guidelines – CG-30223, Rev F
Bionano Access: De Novo Assembly Informatics Report Guidelines – CG-30255, Rev E
Bionano Access: Hybrid Scaffold Report Guidelines – 30324, Rev A

Theory of Operation
Bionano Solve Theory of Operation: Structural Variant Calling – CG-30110, Rev O
Bionano Solve Theory of Operation: Variant Annotation Pipeline – CG-30190, Rev M
Bionano Solve Theory of Operation: Bionano EnFocus FSHD Analysis – CG-30321, Rev E
Bionano Solve Theory of Operation: Bionano EnFocus Fragile X Analysis – CG-30457, Rev B
Bionano Solve Theory of Operation: Hybrid Scaffold – CG-30073, Rev G

User Guide
Bionano Access Software User Guide – CG-30142, Rev Q

Installation Guide
Bionano Access Installation Guide – CG-30170, Rev AJ
Bionano Solve Installation Guide – CG-30182, Rev R

Data Interpretation Guide
Bionano Saphyr System Application Specifications – CG-00008, Rev D
Visualizing Different Classes of Structural Variants in Bionano Access Software – CG-30548, Rev B

Analysis Quick Start
Analysis Quick Start: Annotated Rare Variant Calling – 30375, Rev A

Specification Sheet
OGM File Format Specification Sheet – CG-00045, Rev B

Technical Documentation
Data Security Guidelines – CG-30292, Rev E
Red Hat Enterprise Linux Update Procedure – CG-00077, Rev A
Bionano Access API Guide – CG-30462, Rev B
How to enable HTTPS in Bionano Access – 30377, Rev B
Guidelines for Running Bionano Solve on the Command Line – CG-30205, Rev I
How to Align a bnx to a Reference – 30194, Rev B

Compute On Demand

Release Notes
Bionano Compute On Demand v1.4 Release Notes – RNOTE-00006, Rev B

NxClinical Software

Release Notes
NxClinical 6.2 Release Notes – RNOTE-00001, Rev B

System Requirements
NxClinical System Requirements for AWS – 30580, Rev A
NxClinical System Requirements for Local Installation – 30577, Rev A

User Guide
NxClinical License Update Instructions (Windows) – 30579, Rev A
NxClinical License Update Instructions (Linux) -30578, Rev A
NxClinical Query Example Sheet – 30581, Rev B

Other Software

Release Notes
Bionano Label Density Calculator v1.0 Release Notes – 30317, Rev A

User Guide
Bionano Label Density Calculator User Guide – 30318, Rev A

Software Support Videos

Watch these short software tutorial and educational videos to learn how to perform administrative functions or get the most out the software with in-depth sessions on how to execute certain features.

Bionano Access™ Software

Video
1:56

Bionano Access v1.7 – Rare Variant Analysis Workflow – 30420, Rev A
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Video
14:36

Bionano Access v1.7 – De Novo Assembly Workflow – 30416, Rev A
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Video
14:24

Bionano Access v1.7 – EnFocus FSHD Workflow – 30421, Rev A
Watch now
Video
17:21

Bionano Access v1.7 – EnFocus Fragile X Workflow – 30427, Rev A
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Video
16:39

Bionano Access v1.7 – AOH Workflow – 30428, Rev A
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NxClinical Software

Video
27:19

What is NxClinical and how can it help my case review
Watch now
Video
10:00

UPD Detection from SNP arrays or NGS Data
Watch now
Video
13:34

Increase efficiency and improve turnaround time by utilizing the Variant Interpretation Assistant system
Watch now
Video
10:33

Building and using Gene & Region Panels in NxClinical
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Video
25:00

Cancer predisposition review (combined CNV and Seq var analysis)
Watch now
Video
29:09

Combinatorial analysis of Copy Number and Sequence Variants at your fingertips
Watch now
Video
27:21

Constitutional singleton case review – Combined Cyto and Molecular analysis using NGS and array data (from raw data to final report)
Watch now
Video
27:21

Constitutional singleton case review – Cytogenetic workflow (from raw data to final report)
Watch now
Video
28:38

Copy Number analysis by NGS Urban legend or true reality
Watch now
Video
8:51

Dealing with mosaicism (detection and measurement options and functionality)
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Video
9:54

Delving into the genes track – transcript selection, linking out to your favorite databases
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Video
19:35

Detecting CNV & AOH events from NGS data using the MSR and Self-Reference Algorithms
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Video
15:15

Detecting CNV & AOH events from SNP array data
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Video
13:37

Inheritance analysis using array or NGS data
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Video
25:58

Making your oncology case review process more efficient
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Video
22:44

Modern CMA Solutions – New GDA-Cyto and GSA-Cyto SNP arrays with NxClinical
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Video
18:09

NxClinical 6.0 Homepage Overview
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Video
10:30

Overview of Admin Functions
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Video
16:53

Utilizing HPO terms to generate SAP scores to prioritize variants and improve case review efficiency
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LOOKING FOR ADDITIONAL INFORMATION?

Software Support Products

Get support information for our software products, including NxClinical, Bionano Access, and our Compute on Demand solutions.

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Software Downloads

Find the most recent software versions to download.

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Public Datasets

See example OGM data generated with the Saphyr system using Bionano Access and Solve.

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Contact Support

For Instrument, Kits, Consumables, and Access Software Support

support@bionano.com

For NxClinical and Nexus Copy Number Software Support

software-support@bionano.com

+44 115 654 8660 (UK)
+33 5 37 10 00 77 (France)
+32 10 39 71 00 (Belgium)